Nomenclature

Gene Symbol
LSM3 (H. sapiens)
Other Gene Symbols
SMX4, USS2, YLR438C
Full Name
LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)
Other Names
LSM3, U6 snRNA-associated Sm-like protein LSm3

Other Resources

Entrez: Gene Info
27258
Uniprot: Protein Info
LSM3_HUMAN
Organism-Specific Database
BioGrid: Interaction Info
118105
PDB: Structures
SpliProt3D: Structural Model
LSM3

Gene Product Info

Molecular Weight (kD)
11.8
Domains
Motifs
Features
Complex Association
B complex, tri-snRNP
Class / Family
LSm
Notes

Orthologs

Name Organism
LSM3 S. cerevisiae
lsm3 S. pombe
LSm3 D. melanogaster
Y62E10A.12 C. elegans
LSM3 G. gallus

View orthologs at Homologene

Interactions
(from Hegele et al, 2012)

Interacting Partner 1 Interacting Partner 2 Interaction Type Score PubMed ID
LSM3 SNRPD1 Y2H: Prey/Bait 0.67 22365833
LSM3 SNRPD3 Dervied from Literature 15231747
LSM3 SNRPD3 Y2H: Bidirectional 1 22365833
LSM3 SNRPE Dervied from Literature 15231747
LSM3 SNRPG Y2H: Prey/Bait 0.5 22365833
LSM3 LSM2 Dervied from Literature 14667819, 15231747, 16169070, 16189514
LSM3 LSM2 Y2H: Bidirectional 1 22365833
LSM3 LSM5 Dervied from Literature 15231747
LSM3 LSM6 Dervied from Literature 15231747
LSM3 LSM7 Y2H: Bait/Prey 1 22365833
LSM3 LSM7 Dervied from Literature 15231747
LSM3 LSM8 Y2H: Bait/Prey 0.5 22365833
LSM3 LSM8 Dervied from Literature 15231747
LSM3 SF3B2 Y2H: Bait/Prey 1 22365833
LSM3 WDR83 Y2H: Bait/Prey 0.75 22365833
LSM3 THOC5 Y2H: Bait/Prey 0.75 22365833
LSM3 YBX1 Y2H: Bait/Prey 0.75 22365833
LSM3 SMN1 Dervied from Literature 10851237

view interactions at SSPPIR...

Identified in the following experiments:

Name Species # Of Peptides PubMed ID
tri-snRNP, H. sapiens, (Agafonov et al 2011) H. sapiens 90 21536652
B complex on MINX, H. sapiens, (Agafonov et al 2011) H. sapiens 87 21536652
A complex on MINX, H. sapiens, (Agafonov et al 2011) H. sapiens 16 21536652
B complex via tobramycin tag, sample 2, H. sapiens, (Deckert et al 2006) H. sapiens 8 16809785
Bact complex, deltaPrp2 on M3Actin, Orbitrap, 0.25 pmol, S. cerevisiae, (Warkocki et al 2009) S. cerevisiae 7 19935684
B complex Sample#2, on MINX-MS2 "kinetically" trapped, H. sapiens, (Boesler et al 2015) H. sapiens 6 27377154
B complex via MS2 tag, sample 2, H. sapiens, (Deckert et al 2006) H. sapiens 5 16809785
B complex on Ftz, sample 2, H. sapiens, (Herold et al 2009) H. sapiens 4 18981222
Pre-B complex Sample#1, on MINX-MS2 stalled by DDX23 (hPrp28) depletion, H. sapiens, (Boesler et al 2015) H. sapiens 4 27377154
Pre-B complex Sample#2, on MINX-MS2 stalled by DDX23 (hPrp28) depletion, H. sapiens, (Boesler et al 2015) H. sapiens 4 27377154
Bact complex on PM5-20, H. sapiens, (Bessonov et al 2010) H. sapiens 3 20980672
Mixed spliceosome complexes on Ftz, H. sapiens, (Zhou et al 2002) H. sapiens 3 12226669
B complex sample 2, H. sapiens, (Bessonov et al 2008) H. sapiens 3 18322460
B complex via MS2 tag, sample 1, H. sapiens, (Deckert et al 2006) H. sapiens 3 16809785
B complex via tobramycin tag, sample 1, H. sapiens, (Deckert et al 2006) H. sapiens 3 16809785
B complex on PM5, sample 1, H. sapiens, (Schmidt et al 2014) H. sapiens 3 24448447
B complex on PM5, sample 2, H. sapiens, (Schmidt et al 2014) H. sapiens 3 24448447
C complex released in 1M NaCl, H. sapiens, (Bessonov et al 2008) H. sapiens 2 18322460
penta-snRNP, S. cerevisiae, (Stevens et al 2002) S. cerevisiae 2 11804584
C complex sample 2, H. sapiens, (Bessonov et al 2008) H. sapiens 2 18322460
Bact complex on PM5-10, H. sapiens, (Bessonov et al 2010) H. sapiens 2 20980672
B complex on Ftz, sample 1, H. sapiens, (Herold et al 2009) H. sapiens 2 18981222
B complex on Ftz, sample 2, D. melanogaster, (Herold et al 2009) D. melanogaster 2 18981222
B complex on Ftz, sample 1, D. melanogaster, (Herold et al 2009) D. melanogaster 2 18981222
Bact complex, deltaPrp2 on M3Actin, Q-Tof, 1 pmol, S. cerevisiae, (Warkocki et al 2009) S. cerevisiae 2 19935684
P complex on AdML, short 3' exon, Velos, H. sapiens, (Ilagan et al 2013) H. sapiens 2 23345524
C complex on PM5, sample 2, H. sapiens, (Schmidt et al 2014) H. sapiens 2 24448447
B complex Sample#1, on MINX-MS2 "kinetically" trapped, H. sapiens, (Boesler et al 2015) H. sapiens 2 27377154
B complex Sample#3, on MINX-MS2 "kinetically" trapped, H. sapiens, (Boesler et al 2015) H. sapiens 2 27377154
B complex sample 1, S. cerevisiae, (Fabrizio et al 2009) S. cerevisiae 1 19941820
C complex exons trimmed, H. sapiens, (Ilagan et al 2009) H. sapiens 1 19761775
Mixed spliceosome complexes on AdML, H. sapiens, (Zhou et al 2002) H. sapiens 1 12226669
C complex, H. sapiens, (Jurica et al 2002) H. sapiens 1 11991638
C complex on AdML, 3'SS mut, Velos, H. sapiens, (Ilagan et al 2013) H. sapiens 1 23345524
Pre-B complex Sample#3, on MINX-MS2 stalled by DDX23 (hPrp28) depletion, H. sapiens, (Boesler et al 2015) H. sapiens 1 27377154
B* complex, H. sapiens, (Makarov et al 2002) H. sapiens 12411573
Mixed spliceosome complexes, H. sapiens, (Rappsilber et al 2002) H. sapiens 12176931
C complex on PM5, sample 1, H. sapiens, (Schmidt et al 2014) H. sapiens 24448447

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