Nomenclature

Gene Symbol
LSM6 (H. sapiens)
Other Gene Symbols
YDR378C
Full Name
LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
Other Names
LSM6, Sm protein F, U6 snRNA-associated Sm-like protein LSm6

Other Resources

Entrez: Gene Info
11157
Uniprot: Protein Info
LSM6_HUMAN
Organism-Specific Database
BioGrid: Interaction Info
116328
PDB: Structures
SpliProt3D: Structural Model
LSM6

Gene Product Info

Molecular Weight (kD)
9.1
Domains
Motifs
Features
Complex Association
B complex, tri-snRNP
Class / Family
LSm
Notes

Orthologs

Name Organism
LSM6 S. cerevisiae
lsm6 S. pombe
CG9344 D. melanogaster
Y71G12B.14 C. elegans
PF13_0142 P. falciparum
LSM6 G. gallus

View orthologs at Homologene

Interactions
(from Hegele et al, 2012)

Interacting Partner 1 Interacting Partner 2 Interaction Type Score PubMed ID
LSM6 SNRPD2 Dervied from Literature 15231747
LSM6 SNRPD2 Y2H: Prey/Bait 1 22365833
LSM6 SNRPF Y2H: Prey/Bait 1 22365833
LSM6 LSM2 Y2H: Bidirectional 1 22365833
LSM6 LSM3 Dervied from Literature 15231747
LSM6 LSM5 Dervied from Literature 15231747
LSM6 LSM5 Y2H: Bidirectional 0.78 22365833
LSM6 LSM7 Y2H: Bait/Prey 0.67 22365833
LSM6 LSM7 Dervied from Literature 15231747
LSM6 LSM8 Dervied from Literature 15231747
LSM6 SMN1 Dervied from Literature 10851237

view interactions at SSPPIR...

Identified in the following experiments:

Name Species # Of Peptides PubMed ID
tri-snRNP, H. sapiens, (Agafonov et al 2011) H. sapiens 85 21536652
B complex on MINX, H. sapiens, (Agafonov et al 2011) H. sapiens 63 21536652
B complex via MS2 tag, sample 2, H. sapiens, (Deckert et al 2006) H. sapiens 20 16809785
B complex on PM5, sample 1, H. sapiens, (Schmidt et al 2014) H. sapiens 17 24448447
A complex on MINX, H. sapiens, (Agafonov et al 2011) H. sapiens 15 21536652
B complex sample 2, H. sapiens, (Bessonov et al 2008) H. sapiens 12 18322460
Bact complex, deltaPrp2 on M3Actin, Orbitrap, 0.25 pmol, S. cerevisiae, (Warkocki et al 2009) S. cerevisiae 11 19935684
B complex on PM5, sample 2, H. sapiens, (Schmidt et al 2014) H. sapiens 11 24448447
Bact complex, deltaPrp2 on M3Actin, Q-Tof, 1 pmol, S. cerevisiae, (Warkocki et al 2009) S. cerevisiae 10 19935684
B complex Sample#3, on MINX-MS2 "kinetically" trapped, H. sapiens, (Boesler et al 2015) H. sapiens 10 27377154
B complex via MS2 tag, sample 1, H. sapiens, (Deckert et al 2006) H. sapiens 8 16809785
B complex via tobramycin tag, sample 2, H. sapiens, (Deckert et al 2006) H. sapiens 6 16809785
Pre-B complex Sample#3, on MINX-MS2 stalled by DDX23 (hPrp28) depletion, H. sapiens, (Boesler et al 2015) H. sapiens 6 27377154
B complex Sample#2, on MINX-MS2 "kinetically" trapped, H. sapiens, (Boesler et al 2015) H. sapiens 6 27377154
B complex sample 1, S. cerevisiae, (Fabrizio et al 2009) S. cerevisiae 5 19941820
Prp8 tap-tag pulldown, S. cerevisiae, (Khanna et al 2009) S. cerevisiae 4 19789211
Supraspliceosome, G. gallus, (Chen et al 2007) G. gallus 3 17537823
C complex released in 1M NaCl, H. sapiens, (Bessonov et al 2008) H. sapiens 3 18322460
Supraspliceosome, H. sapiens, (Chen et al 2007) H. sapiens 3 17537823
Pre-B complex Sample#1, on MINX-MS2 stalled by DDX23 (hPrp28) depletion, H. sapiens, (Boesler et al 2015) H. sapiens 3 27377154
Pre-B complex Sample#2, on MINX-MS2 stalled by DDX23 (hPrp28) depletion, H. sapiens, (Boesler et al 2015) H. sapiens 3 27377154
penta-snRNP, S. cerevisiae, (Stevens et al 2002) S. cerevisiae 2 11804584
C complex sample 2, H. sapiens, (Bessonov et al 2008) H. sapiens 2 18322460
Cwc21 tap-tag pulldown, S. cerevisiae, (Khanna et al 2009) S. cerevisiae 2 19789211
Bact complex sample 1, S. cerevisiae, (Fabrizio et al 2009) S. cerevisiae 1 19941820
B complex sample 2, S. cerevisiae, (Fabrizio et al 2009) S. cerevisiae 1 19941820
Bact complex on PM5-10, H. sapiens, (Bessonov et al 2010) H. sapiens 1 20980672
Mixed spliceosome complexes on AdML, H. sapiens, (Zhou et al 2002) H. sapiens 1 12226669
Mixed spliceosome complexes on Ftz, H. sapiens, (Zhou et al 2002) H. sapiens 1 12226669
C complex on PM5, sample 2, H. sapiens, (Schmidt et al 2014) H. sapiens 1 24448447
B complex Sample#1, on MINX-MS2 "kinetically" trapped, H. sapiens, (Boesler et al 2015) H. sapiens 1 27377154
tri-snRNP, S. cerevisiae, (Gottschalk et al 1999) S. cerevisiae 10449419
tri-snRNP, S. cerevisiae, (Stevens et al 1999) S. cerevisiae 11720284
Mixed spliceosome complexes, H. sapiens, (Rappsilber et al 2002) H. sapiens 12176931
C complex on PM5, sample 1, H. sapiens, (Schmidt et al 2014) H. sapiens 24448447

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