| Primary EMD entry | Complex | Organism | Lab | Resolution | PDB model | Related EMD Maps |
| EMD-8622 | U1snRNP | S. cerevisiae | Zhao | 3.7Å | 5uz5 | |
| EMD-8011 | tri-snRNP, foot region | S. cerevisiae | Nagai | 3.7 Å | 5gam | 8006, 8007, 8008, 8009, 8010, 8012, 8011, 8013, 8014 |
| EMD-8012 | tri-snRNP | S. cerevisiae | Nagai | 3.7 Å | 5gan | 8006, 8007, 8008, 8009, 8010, 8012, 8011, 8013, 8014 |
| EMD-8013 | tri-snRNP, head region | S. cerevisiae | Nagai | 4.2 Å | 5gao | 8006, 8007, 8008, 8009, 8010, 8012, 8011, 8013, 8014 |
| EMD-8014 | tri-snRNP, body region | S. cerevisiae | Nagai | 3.6 Å | 5gap | 8006, 8007, 8008, 8009, 8010, 8012, 8011, 8013, 8014 |
| EMD-6561 | tri-snRNP | S. cerevisiae | Shi | 3.81 Å | 3jcm | 6561, 6562, 6563, 6564, 6565, 6566, 6567, 6568, 6569, 6570, 6571, 6572, 6573 |
| EMD-2966 | tri-snRNP | S. cerevisiae | Nagai | 5.9 Å | na | 2966 |
| EMD-3766 | B complex | Human | Lührmann/Stark | 4.5 Å | 5o9z | 3766, 3767, 3768, 3769 |
| EMD-3682 | B complex | S. cerevisiae | Nagai | 3.9 Å | 5nrl | 3682, 3683, 3684, 3685, 3686, 3687, 3688 |
| EMD-1066 | B complex | Human | Lührmann/Stark | 40 Å | na | 1066 |
| EMD-4099 | Bact | S. cerevisiae | Lührmann/Stark | 5.8 Å | na | 4099 |
| EMD-9524 | Bact | S. cerevisiae | Shi | 3.5 Å | 5gm6 | |
| EMD-3539 | C* complex | S. cerevisiae | Nagai | 3.85 Å | 5mps | 3539, 3541, 3542 |
| EMD-3541 | C* complex | S. cerevisiae | Nagai | 4.17 Å | 5mq0 | 3539, 3541, 3542 |
| EMD-6684 | C* complex | S. cerevisiae | Shi | 4 Å | 5wsg | 6684 |
| EMD-6721 | C* complex | Human | Shi | 3.6 Å | 5xjc | 6721 |
| EMD-3545 | C* complex | Human | Lührmann/Stark | 5.9 Å | 5mqf | 3545, 3547 |
| EMD-4055 | C complex | S. cerevisiae | Nagai | 3.8 Å | 5lj3 | 4055, 4056, 4057, 4058, 4059 |
| EMD-4057 | C complex | S. cerevisiae | Nagai | 10 Å | 5lj5 | 4055, 4056, 4057, 4058, 4059 |
| EMD-9525 | C complex | S. cerevisiae | Shi | 3.4 Å | 5gmk | 9525, 9526, 9527 |
| EMD-1062 | C complex | Human | Moore/Grigorieff | 30 Å | na | 1062 |
| EMD-1846 | C complex | Human | Lührmann/Stark | 29 Å | na | 1846 |
| EMD-1848 | C complex, high salt core | Human | Lührmann/Stark | na | na | 1848 |
| EMD-1847 | U5 35S complex | Human | Lührmann/Stark | 27.8 Å | na | 1847 |
| EMD-3979 | P w/ 3' SS docked | S. cerevisiae | Nagai | 3.7Å | 6exn | 3980 |
| EMD-3980 | P w/ 3' SS undocked | S. cerevisiae | Nagai | 4Å | None | 3979 |
| EMD-6413 | Released intron complex | S. pombe | Shi | 3.6 Å | 3jb9 | 6413, 6414, 6415, 6416, 6417, 6418, 6419, 6420, 6421 |
| EMD-1294 | Supraspliceosome | Human | Sperling | 22 Å | na | 1294 |
| EMD-6915 | SF3B complex with E7107 | Human | Larsen | 3.95 Å | 5zd5 | |
