Nomenclature

Gene Symbol
RBM39 (H. sapiens)
Other Gene Symbols
CAPER, CAPERalpha, DKFZp781C0423, FLJ44170, FSAP59
Full Name
RNA binding motif protein 39
Other Names
RNPC2, RNA-binding protein 39, RNA-binding region (RNP1, RRM) containing 2, coactivator of activating protein-1 and estrogen receptors, functional spliceosome-associated protein 59, hepatocellular carcinoma protein 1

Other Resources

Entrez: Gene Info
9584
Uniprot: Protein Info
RBM39_HUMAN
Organism-Specific Database
—
BioGrid: Interaction Info
114952
PDB: Structures
2JRS
SpliProt3D: Structural Model
RBM39

Gene Product Info

Molecular Weight (kD)
59.4
Domains
RRM
Motifs
—
Features
—
Class / Family
pre-mRNA/mRNA binding proteins
Notes
—

Orthologs

Name Organism
rsd1 S. pombe
CG11266 D. melanogaster
Y55F3AM.3 C. elegans
MAL13P1.120 P. falciparum
RBM39 G. gallus

View orthologs at Homologene

Interactions
(from Hegele et al, 2012)

Interacting Partner 1 Interacting Partner 2 Interaction Type Score PubMed ID
RBM39 U2AF2 Y2H: Prey/Bait 0.75 22365833
RBM39 CHERP Y2H: Prey/Bait 0.5 22365833
RBM39 PRPF40A Y2H: Prey/Bait 0.5 22365833
RBM39 RBM25 Y2H: Prey/Bait 1 22365833
RBM39 PRPF3 Y2H: Prey/Bait 0.75 22365833
RBM39 PRPF38A Y2H: Prey/Bait 0.5 22365833
RBM39 RNF113A Y2H: Prey/Bait 0.75 22365833
RBM39 NKAP Y2H: Prey/Bait 0.67 22365833
RBM39 SAP18 Y2H: Bidirectional 1 22365833
RBM39 DDX39B Dervied from Literature — 14667819
RBM39 TOE1 Y2H: Prey/Bait 0.67 22365833
RBM39 HNRNPH2 Y2H: Prey/Bait 0.67 22365833
RBM39 TTC14 Y2H: Prey/Bait 0.75 22365833
RBM39 ZCCHC10 Y2H: Prey/Bait 1 22365833
RBM39 SAP30BP Y2H: Bidirectional 1 22365833

view interactions at SSPPIR...

Identified in the following experiments:

Name Species # Of Peptides PubMed ID
B complex sample 2, H. sapiens, (Bessonov et al 2008) H. sapiens 48 18322460
B complex via MS2 tag, sample 1, H. sapiens, (Deckert et al 2006) H. sapiens 46 16809785
B complex on PM5, sample 2, H. sapiens, (Schmidt et al 2014) H. sapiens 44 24448447
Pre-B complex Sample#3, on MINX-MS2 stalled by DDX23 (hPrp28) depletion, H. sapiens, (Boesler et al 2015) H. sapiens 35 27377154
B complex via MS2 tag, sample 2, H. sapiens, (Deckert et al 2006) H. sapiens 33 16809785
B complex Sample#3, on MINX-MS2 "kinetically" trapped, H. sapiens, (Boesler et al 2015) H. sapiens 25 27377154
B complex on Zeste62, sample 3, D. melanogaster, (Herold et al 2009) D. melanogaster 23 18981222
B complex Sample#2, on MINX-MS2 "kinetically" trapped, H. sapiens, (Boesler et al 2015) H. sapiens 23 27377154
Pre-B complex Sample#2, on MINX-MS2 stalled by DDX23 (hPrp28) depletion, H. sapiens, (Boesler et al 2015) H. sapiens 22 27377154
B complex on Ftz, sample 1, D. melanogaster, (Herold et al 2009) D. melanogaster 20 18981222
A complex, H. sapiens, (Behzadnia et al 2007) H. sapiens 17 17332742
B complex on Zeste62, sample 1, D. melanogaster, (Herold et al 2009) D. melanogaster 16 18981222
E-like complex (E') Weri, H. sapiens, (Sharma et al 2008) H. sapiens 15 18193060
B complex on Zeste62, sample 2, D. melanogaster, (Herold et al 2009) D. melanogaster 14 18981222
Pre-B complex Sample#1, on MINX-MS2 stalled by DDX23 (hPrp28) depletion, H. sapiens, (Boesler et al 2015) H. sapiens 12 27377154
B complex via tobramycin tag, sample 2, H. sapiens, (Deckert et al 2006) H. sapiens 11 16809785
C complex sample 2, H. sapiens, (Bessonov et al 2008) H. sapiens 10 18322460
Bact complex on PM5-20, H. sapiens, (Bessonov et al 2010) H. sapiens 10 20980672
B complex sample 1, H. sapiens, (Bessonov et al 2008) H. sapiens 10 18322460
C complex on PM5, sample 2, H. sapiens, (Schmidt et al 2014) H. sapiens 10 24448447
B complex Sample#1, on MINX-MS2 "kinetically" trapped, H. sapiens, (Boesler et al 2015) H. sapiens 10 27377154
Supraspliceosome, H. sapiens, (Chen et al 2007) H. sapiens 9 17537823
E-like complex (E') HeLa, H. sapiens, (Sharma et al 2008) H. sapiens 9 18193060
B complex on PM5, sample 1, H. sapiens, (Schmidt et al 2014) H. sapiens 9 24448447
Bact complex on PM5-10, H. sapiens, (Bessonov et al 2010) H. sapiens 8 20980672
Mixed complexes Weri, H. sapiens, (Sharma et al 2008) H. sapiens 7 18193060
Mixed spliceosome complexes on AdML, H. sapiens, (Zhou et al 2002) H. sapiens 7 12226669
B complex on Ftz, sample 1, H. sapiens, (Herold et al 2009) H. sapiens 7 18981222
E complex IP'd by antibody to PRPF40A, H. sapiens, (Marakov et al 2011) H. sapiens 7 22110043
B complex on Ftz, sample 2, H. sapiens, (Herold et al 2009) H. sapiens 6 18981222
H complex, H. sapiens, (Jurica et al 2002) H. sapiens 6 11991638
A-like complex (A') HeLa, H. sapiens, (Sharma et al 2008) H. sapiens 6 18193060
EDC-A complex Weri, H. sapiens, (Sharma et al 2008) H. sapiens 6 18193060
E complex IP'd by antibody to U1A, H. sapiens, (Marakov et al 2011) H. sapiens 6 22110043
B complex via tobramycin tag, sample 1, H. sapiens, (Deckert et al 2006) H. sapiens 5 16809785
EDC-E complex Weri, H. sapiens, (Sharma et al 2008) H. sapiens 4 18193060
C complex on Ftz, sample 1, D. melanogaster, (Herold et al 2009) D. melanogaster 4 18981222
EDC-A complex HeLa, H. sapiens, (Sharma et al 2008) H. sapiens 4 18193060
C complex on AdML, 3'SS mut, Velos, H. sapiens, (Ilagan et al 2013) H. sapiens 4 23345524
SRM300 pulldown with Srm300 antibody, H. sapiens, (McCracken et al 2005) H. sapiens 4 16159877
C complex sample 1, H. sapiens, (Bessonov et al 2008) H. sapiens 3 18322460
C complex, H. sapiens, (Jurica et al 2002) H. sapiens 3 11991638
P complex on AdML, short 3' exon, Velos, H. sapiens, (Ilagan et al 2013) H. sapiens 3 23345524
C complex, H. sapiens, (Ilagan et al 2009) H. sapiens 2 19761775
EDC-E complex HeLa, H. sapiens, (Sharma et al 2008) H. sapiens 2 18193060
Mixed spliceosome complexes on Ftz, H. sapiens, (Zhou et al 2002) H. sapiens 2 12226669
C complex on PM5, sample 1, H. sapiens, (Schmidt et al 2014) H. sapiens 2 24448447
C complex on Ftz, sample 2, D. melanogaster, (Herold et al 2009) D. melanogaster 1 18981222
SRM160 pulldown with BIC8 antibody, H. sapiens, (McCracken et al 2005) H. sapiens 1 16159877
Mixed spliceosome complexes, H. sapiens, (Rappsilber et al 2002) H. sapiens ■ 12176931
A complex, H. sapiens, (Hartmuth et al 2002) H. sapiens ■ 12477934

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