| Prp8 | D. melanogaster | U5 snRNP | CG8877, Dmel\CG8877, E-2e, prp8 | 279.6 | 161 |
| l(3)72Ab | D. melanogaster | U5 snRNP | Brr2, CG5931, Dmel\CG5931, anon-EST:Liang-1.21, cg5931 | 244.5 | 113 |
| CG13900 | D. melanogaster | 17S U2 snRNP | Dmel\CG13900, SF3B3 | 77.0 | 60 |
| CG2807 | D. melanogaster | 17S U2 snRNP | Dmel\CG2807, anon-21Cd | 149.6 | 54 |
| CG4849 | D. melanogaster | U5 snRNP | Dmel\CG4849, eEF2 | 110.7 | 46 |
| CG31368 | D. melanogaster | PRP19 related | CG14729, CG14730, Dmel\CG31368 | 172.3 | 35 |
| Ars2 | D. melanogaster | | CG7843, Dmel\CG7843, anon-WO0118547.166 | 107.2 | 29 |
| crn | D. melanogaster | PRP19 related | 62D9.a, CG18842, CG3193, Crn, Dmel\CG3193 | 84.3 | 29 |
| CG6841 | D. melanogaster | U5 snRNP | BcDNA:LD43276, Dmel\CG6841, Prp6 | 105.2 | 26 |
| U4-U6-60K | D. melanogaster | U4/U6 snRNP | CG6322, Dmel\CG6322, Prp4, U4/U6-60K | 61.6 | 24 |
| CG11266 | D. melanogaster | | CAPER, CC1.3, Caper, Dmel\CG11266, HCC1 | 31.4 | 23 |
| pAbp | D. melanogaster | | BcDNA:LD24412, CG5119, Dmel\CG5119, PABP, PABP55B | 69.9 | 22 |
| Prp31 | D. melanogaster | U4/U6 snRNP | CG6876, Dmel\CG6876, FBgn0036487, anon-EST:Liang-2.38, clone 2.38 | 55.5 | 22 |
| Cbp80 | D. melanogaster | | CBP80, CG7035, Dmel\CG7035, EG:84H4.3 | 93.2 | 21 |
| Imp | D. melanogaster | | CG1691, Dmel\CG1691, IGF-II, IMP, IMP-1 | 63.4 | 20 |
| CG16941 | D. melanogaster | 17S U2 snRNP | Dmel\CG16941, SF3a1, SF3a120 | 88.1 | 20 |
| Rm62 | D. melanogaster | | 4136, CG10279, DmRH8, Dmel\CG10279, Dmp68 | 62.8 | 19 |
| CG10333 | D. melanogaster | U5 snRNP | DmRH19, Dmel\CG10333, cg10333 | 94.5 | 18 |
| noi | D. melanogaster | 17S U2 snRNP | CG2925, Dmel\CG2925, Noi, SF3A3, SF3a[60] | 58.4 | 17 |
| pUf68 | D. melanogaster | 17S U2 snRNP associated | CG12085, DPUF68, Dmel\CG12085, Fir, HFP | 58.0 | 16 |
| CG6905 | D. melanogaster | PRP19 complex | Dmel\CG6905, cdc5-like, cef1 | 93.1 | 16 |
| Prp19 | D. melanogaster | PRP19 complex | BcDNA:LD02793, CG5519, Dmel\CG5519, GPB, Gbp | 55.2 | 16 |
| CG7288 | D. melanogaster | tri-snRNP | Dmel\CG7288 | 57.5 | 16 |
| SmD3 | D. melanogaster | Sm | CG8427, Dmel\CG8427, SYM10, Sm D3, dD3 | 15.6 | 15 |
| CG6015 | D. melanogaster | Second step factors | Dmel\CG6015, prp17 | 65.4 | 15 |
| CG7757 | D. melanogaster | U4/U6 snRNP | Dmel\CG7757, PRPF3, Prp3 | 60.1 | 15 |
| CG5451 | D. melanogaster | Recruited at B complex | Dmel\CG5451 | 57.3 | 14 |
| Tango4 | D. melanogaster | PRP19 complex | CG1796, Dmel\CG1796, TANGO4 | 52.7 | 14 |
| CG3605 | D. melanogaster | 17S U2 snRNP | Dmel\CG3605 | 84.8 | 13 |
| CG1677 | D. melanogaster | | Dmel\CG1677 | 109.1 | 12 |
| SmB | D. melanogaster | Sm | B, CG5352, Dmel\CG5352, SYM10, Sm B | 21.0 | 12 |
| CG4119 | D. melanogaster | Recruited at A complex | BcDNA:LD23634, Dmel\CG4119, cg4119 | 112.7 | 12 |
| CG6197 | D. melanogaster | PRP19 related | Dmel\CG6197, XAB2, Xab2 | 103.3 | 11 |
| CG6686 | D. melanogaster | tri-snRNP | Dmel\CG6686, SART1 | 13.2 | 11 |
| CG3542 | D. melanogaster | Recruited at A complex | Dmel\CG3542 | 86.7 | 11 |
| SmD2 | D. melanogaster | Sm | BcDNA:LD03002, CG1249, Dmel\CG1249, dD2, snRNP D2 | 13.5 | 10 |
| CG3436 | D. melanogaster | U5 snRNP | Dmel\CG3436 | 9.1 | 10 |
| U2A | D. melanogaster | 17S U2 snRNP | BcDNA:RE56869, CG1406, Dmel\CG1406, U2A', dU2A' | 29.7 | 9 |
| SmE | D. melanogaster | Sm | BcDNA:GM19936, CG18591, Dmel\CG18591, E, dE | 11.1 | 9 |
| CG18005 | D. melanogaster | Recruited at B complex | Dmel\CG18005 | 61.4 | 9 |
| lost | D. melanogaster | | CG14648, Dmel\CG14648, Growl, anon-WO0118547.126, growl | 59.0 | 9 |
| CG2931 | D. melanogaster | | Dmel\CG2931, cg2931 | 33.6 | 8 |
| CG1965 | D. melanogaster | | Dmel\CG1965 | 102.6 | 8 |
| Prp38 | D. melanogaster | Recruited at B complex | CG30342, CG8054, Dmel\CG30342, dprp38 | 40.1 | 8 |
| CG9667 | D. melanogaster | PRP19 related | Dmel\CG9667 | 31.4 | 8 |
| eIF4AIII | D. melanogaster | EJC/mRNP | 7483, CG7483, DmRH28, Dmel\CG7483, anon-WO0118547.364 | 45.6 | 8 |
| Bx42 | D. melanogaster | PRP19 related | BX42, CG8264, Dmel\CG8264, SKIP, Skip | 61.2 | 8 |
| Cdc27 | D. melanogaster | | APC3, Apc3, CDC27, CDC27Dm, CG8610 | 101.3 | 8 |
| U2af50 | D. melanogaster | 17S U2 snRNP associated | 9-21, CG9998, DU2AF50, DmU2AF[50], Dmel\CG9998 | 46.7 | 8 |
| nonA | D. melanogaster | | Bj6, Bj6-1, CG4211, Dmel\CG4211, NonA | 77.0 | 7 |
| l(1)10Bb | D. melanogaster | PRP19 related | 10Ba, CG1639, Dmel\CG1639, l(1)G0169, l(1)G14 | 17.0 | 7 |
| snRNP-U1-70K | D. melanogaster | U1 snRNP | 70K, CG8749, Dm70K, Dmel\CG8749, U1 70K | 52.9 | 6 |
| CG9684 | D. melanogaster | | Dmel\CG9684 | 71.9 | 6 |
| yps | D. melanogaster | | CG5654, Dmel\CG5654, YPS, Yps, p45 | 38.2 | 6 |
| Pep | D. melanogaster | | CG6143, Dmel\CG6143, PEP, PEP/X4, X4/PEP | 78.0 | 6 |
| CG7028 | D. melanogaster | | BcDNA:GH04978, Dmel\CG7028, FBgn0027587, PRP4, prp4 | 104.0 | 6 |
| lark | D. melanogaster | | CG8597, Dmel\CG8597, LARK, Lark, dLARK | 39.9 | 6 |
| CG13298 | D. melanogaster | 17S U2 snRNP | Dmel\CG13298, cg13298 | 14.2 | 6 |
| SF2 | D. melanogaster | | 154911_at, ASF, ASF/SF2, CG6987, Dmel\CG6987 | 28.4 | 6 |
| B52 | D. melanogaster | | B52/SRp55, B52/dSRp55, CG10851, Dmel\CG10851, E(Dfd) | 42.8 | 6 |
| cyp33 | D. melanogaster | PRP19 related | CG4886, Cyp33, Dcyp33, Dmel\CG4886 | 33.3 | 6 |
| CG17838 | D. melanogaster | | AI945337, Dmel\CG17838, anon-WO0118547.613, cg17838, l(3)03806 | 59.4 | 6 |
| CG9548 | D. melanogaster | 17S U2 snRNP | BcDNA:RH02789, Dmel\CG9548 | 12.5 | 5 |
| l(2)37Cb | D. melanogaster | Recruited at Bact complex | CG10689, Cb, Dmel\CG10689, cg10689, l(2)E104 | 102.8 | 5 |
| CG4980 | D. melanogaster | PRP19 complex | Dmel\CG4980 | 31.3 | 5 |
| pea | D. melanogaster | Second step factors | CG8241, Dmel\CG8241, Prp22, cg8241, prp22 | 141.9 | 5 |
| CG10418 | D. melanogaster | LSm | BcDNA:GM14851, Dmel\CG10418 | 10.7 | 5 |
| LSm7 | D. melanogaster | LSm | BcDNA:RH73529, CG13277, Dmel\CG13277 | 12.2 | 4 |
| SmG | D. melanogaster | Sm | BcDNA:RE61341, BcDNA:RH35475, CG9742, Dmel\CG9742, G | 8.5 | 4 |
| sip1 | D. melanogaster | Recruited at B complex | BcDNA:GH11690, CG7238, Dmel\CG7238, GH11690 | 94.8 | 4 |
| SmD1 | D. melanogaster | Sm | BcDNA:RE39488, CG10753, Dmel\CG10753, dD1, l(2)SH3 003 | 13.8 | 4 |
| snf | D. melanogaster | U1 snRNP | CG4528, D25, Dmel\CG4528, SNF, SNF/D25 | 24.5 | 4 |
| CG14641 | D. melanogaster | PRP19 related | Dmel\CG14641, cg14641 | 47.2 | 4 |
| abs | D. melanogaster | Recruited at C complex | ABS, CG14637, DmRH23, Dmel\CG14637, anon-WO0118547.315 | 69.5 | 4 |
| CG10754 | D. melanogaster | 17S U2 snRNP | Dmel\CG10754 | 30.3 | 4 |
| CG7564 | D. melanogaster | | Dmel\CG7564 | 48.4 | 4 |
| Dim1 | D. melanogaster | U5 snRNP | BcDNA:RE13747, CG3058, Dmel\CG3058, U5-15kD | 16.8 | 4 |
| SRm160 | D. melanogaster | | CG11274, Dmel\CG11274, SRM160 | 107.6 | 3 |
| CG11107 | D. melanogaster | 17S U2 snRNP associated | Dmel\CG11107, anon-EST:Liang-1.18, cg11107, clone 1.18 | 82.7 | 3 |
| CG4935 | D. melanogaster | Recruited at C complex | BG:DS02740.2, Dmel\CG4935, MET30 | 34.0 | 3 |
| CG3225 | D. melanogaster | Recruited at C complex | Dmel\CG3225, cg3225 | 76.1 | 3 |
| Srp54 | D. melanogaster | | CG4602, Dmel\CG4602, SRp54, anon-EST:Liang-2.16, clone 2.16 | 58.4 | 3 |
| CG17768 | D. melanogaster | LSm | BcDNA:RE35747, CG31990, CG5356, Dmel\CG17768 | 17.0 | 3 |
| hoip | D. melanogaster | U4/U6 snRNP | CG3949, Dmel\CG3949 | 13.9 | 3 |
| ytr | D. melanogaster | | CG18426, Dmel\CG18426, b(2)gcn, bgcn, l(2)60A-F | 21.5 | 3 |
| CG17266 | D. melanogaster | U4/U6 snRNP | Dmel\CG17266 | 20.2 | 3 |
| CG4291 | D. melanogaster | Recruited at B complex | Dmel\CG4291 | 38.8 | 3 |
| qkr58E-1 | D. melanogaster | | CG3613, Dmel\CG3613, QKR58E-1, qkr-58-E, qrk58E-1 | 45.4 | 2 |
| aub | D. melanogaster | | AUB, Aub, CG6137, Dmel\CG6137, ms(2)32D | 91.5 | 2 |
| Hsc70-4 | D. melanogaster | | BAP74, CG4264, Dmel\CG4264, E(csp)1545, E(nd)195 | 71.1 | 2 |
| Cbp20 | D. melanogaster | | CBP20, CG12357, Dmel\CG12357 | 17.7 | 2 |
| Mfap1 | D. melanogaster | Recruited at B complex | CG1017, Dmel\CG1017, dmfap1 | 56.1 | 2 |
| Cypl | D. melanogaster | PRP19 related | CG13892, Dmel\CG13892, cycl | 19.5 | 2 |
| Moca-cyp | D. melanogaster | | BEST:LD38313, CG1866, Dmel\CG1866, anon-WO0147981.13, anon-WO0147981.4 | 112.8 | 2 |
| CG12343 | D. melanogaster | Recruited at C complex | Dmel\CG12343, Syf2 | 26.5 | 2 |
| exu | D. melanogaster | | CG8994, Dmel\CG8994, Exu, bs30h09.y1, exu1 | 58.0 | 2 |
| CG30122 | D. melanogaster | | CG18610, CG5477, Dmel\CG30122, LD11002, SAF-A | 140.5 | 2 |
| REG | D. melanogaster | | CG1591, Dmel\CG1591, REGgamma, dREG, dREGgamma | 28.1 | 1 |
| CG5808 | D. melanogaster | | BcDNA:GH01073, Dmel\CG5808, UKL, cg5808 | 75.5 | 1 |
| Pabp2 | D. melanogaster | | CG2163, Dmel\CG2163, PABP2, PABPN1, ROX2 | 25.0 | 1 |
| CG5641 | D. melanogaster | | Dmel\CG5641 | 43.7 | 1 |
| PQBP1 | D. melanogaster | | CG11820, Dmel\CG11820, PQBP-1, dPQBP-1, dPQBP1 | 27.1 | 1 |
| rin | D. melanogaster | | CG9412, Dmel\CG9412, Nts, Rin, cg9412 | 74.9 | 1 |
| Rack1 | D. melanogaster | | CG7111, Dmel\CG7111, RACK1, dRack1, i173 | 35.6 | 1 |
| Acn | D. melanogaster | | Ba, CG10437, CG10473, Dmel\CG10473, dAcn | 83.7 | 1 |
| CG10907 | D. melanogaster | Recruited at Bact complex | Dmel\CG10907 | 56.6 | 1 |
| CG33097 | D. melanogaster | | CG15187, Dmel\CG33097 | | 1 |
| CG8833 | D. melanogaster | Recruited at Bact complex | Dmel\CG8833, GPTC1 | 107.9 | 1 |
| CG7971 | D. melanogaster | | BcDNA:GH04236, Dmel\CG7971, anon-EST:fe1A7 | 183.7 | 1 |
| CG7255 | D. melanogaster | | Dmel\CG7255 | 66.5 | 1 |
| CG5316 | D. melanogaster | | Dmel\CG5316 | 76.5 | 1 |
| CG4887 | D. melanogaster | Recruited at A complex | Dmel\CG4887, cg4887 | 114.1 | 1 |
