Nomenclature

Gene Symbol
CG3436 (D. melanogaster)
Other Gene Symbols
Dmel\CG3436
Full Name
CG3436
Other Names
—, CG3436 gene product from transcript CG3436-RA

Other Resources

Entrez: Gene Info
33180
Uniprot: Protein Info
Q9VPK9_DROME
Organism-Specific Database
FBgn0031229
BioGrid: Interaction Info
59440
PDB: Structures
SpliProt3D: Structural Model

Gene Product Info

Molecular Weight (kD)
9.1
Domains
Motifs
Features
Complex Association
B complex, Bact complex, C complex, P complex, tri-snRNP, U5 snRNP
Class / Family
U5 snRNP
Notes

Orthologs

Name Organism
SNRNP40 H. sapiens
spf38 S. pombe
C18E3.5 C. elegans
F08G12.2 C. elegans
SNRNP40 G. gallus

View orthologs at Homologene

Identified in the following experiments:

Name Species # Of Peptides PubMed ID
Prp19 tap-tag pulldown, S. pombe, (Ren et al 2011) S. pombe 664 21386897
Cwf2 tap-tag pulldown, S. pombe, (Ren et al 2011) S. pombe 634 21386897
tri-snRNP, H. sapiens, (Agafonov et al 2011) H. sapiens 415 21536652
Prp17tap-tag pulldown, S. pombe, (Ren et al 2011) S. pombe 367 21386897
C complex on PM5, H. sapiens, (Agafonov et al 2011) H. sapiens 333 21536652
Bact complex on PM5-20, H. sapiens, (Agafonov et al 2011) H. sapiens 328 21536652
B complex on MINX, H. sapiens, (Agafonov et al 2011) H. sapiens 321 21536652
B complex Sample#3, on MINX-MS2 "kinetically" trapped, H. sapiens, (Boesler et al 2015) H. sapiens 237 27377154
Pre-B complex Sample#3, on MINX-MS2 stalled by DDX23 (hPrp28) depletion, H. sapiens, (Boesler et al 2015) H. sapiens 141 27377154
A complex on MINX, H. sapiens, (Agafonov et al 2011) H. sapiens 88 21536652
B complex Sample#2, on MINX-MS2 "kinetically" trapped, H. sapiens, (Boesler et al 2015) H. sapiens 75 27377154
B complex Sample#1, on MINX-MS2 "kinetically" trapped, H. sapiens, (Boesler et al 2015) H. sapiens 70 27377154
Pre-B complex Sample#2, on MINX-MS2 stalled by DDX23 (hPrp28) depletion, H. sapiens, (Boesler et al 2015) H. sapiens 63 27377154
C complex on MINX-GG, H. sapiens, (Bessonov et al 2010) H. sapiens 60 20980672
Bact complex on PM5-10, H. sapiens, (Bessonov et al 2010) H. sapiens 48 20980672
C complex on PM5, H. sapiens, (Bessonov et al 2010) H. sapiens 47 20980672
Pre-B complex Sample#1, on MINX-MS2 stalled by DDX23 (hPrp28) depletion, H. sapiens, (Boesler et al 2015) H. sapiens 46 27377154
B complex sample 2, H. sapiens, (Bessonov et al 2008) H. sapiens 37 18322460
B complex on PM5, sample 2, H. sapiens, (Schmidt et al 2014) H. sapiens 36 24448447
B complex via MS2 tag, sample 2, H. sapiens, (Deckert et al 2006) H. sapiens 34 16809785
Bact complex on PM5-20, H. sapiens, (Bessonov et al 2010) H. sapiens 32 20980672
C complex sample 2, H. sapiens, (Bessonov et al 2008) H. sapiens 29 18322460
C complex sample 1, H. sapiens, (Bessonov et al 2008) H. sapiens 29 18322460
C complex on PM5, sample 2, H. sapiens, (Schmidt et al 2014) H. sapiens 29 24448447
B complex via MS2 tag, sample 1, H. sapiens, (Deckert et al 2006) H. sapiens 28 16809785
Dre4 tap-tag pulldown, S. pombe, (Ren et al 2011) S. pombe 26 21386897
C complex on Ftz, sample 1, D. melanogaster, (Herold et al 2009) D. melanogaster 24 18981222
Saf3 tap-tag pulldown, S. pombe, (Ren et al 2011) S. pombe 24 21386897
B complex sample 1, H. sapiens, (Bessonov et al 2008) H. sapiens 23 18322460
B complex on Ftz, sample 1, D. melanogaster, (Herold et al 2009) D. melanogaster 23 18981222
B complex on PM5, sample 1, H. sapiens, (Schmidt et al 2014) H. sapiens 21 24448447
C complex, H. sapiens, (Ilagan et al 2009) H. sapiens 19 19761775
B complex via tobramycin tag, sample 2, H. sapiens, (Deckert et al 2006) H. sapiens 19 16809785
Saf1 tap-tag pulldown, S. pombe, (Ren et al 2011) S. pombe 18 21386897
P complex on AdML, short 3' exon, Velos, H. sapiens, (Ilagan et al 2013) H. sapiens 18 23345524
C complex on Ftz, sample 2, D. melanogaster, (Herold et al 2009) D. melanogaster 17 18981222
C complex on AdML, 3'SS mut, Velos, H. sapiens, (Ilagan et al 2013) H. sapiens 17 23345524
B complex on Ftz, sample 1, H. sapiens, (Herold et al 2009) H. sapiens 16 18981222
C complex 1M NaCl-washed core, H. sapiens, (Bessonov et al 2008) H. sapiens 15 18322460
C complex, H. sapiens, (Jurica et al 2002) H. sapiens 13 11991638
C complex released in 1M NaCl, H. sapiens, (Bessonov et al 2008) H. sapiens 12 18322460
B complex on Ftz, sample 2, H. sapiens, (Herold et al 2009) H. sapiens 10 18981222
Supraspliceosome, G. gallus, (Chen et al 2007) G. gallus 10 17537823
B complex on Zeste62, sample 3, D. melanogaster, (Herold et al 2009) D. melanogaster 10 18981222
B complex on Zeste62, sample 2, D. melanogaster, (Herold et al 2009) D. melanogaster 9 18981222
C complex on PM5, sample 1, H. sapiens, (Schmidt et al 2014) H. sapiens 9 24448447
B complex on Ftz, sample 2, D. melanogaster, (Herold et al 2009) D. melanogaster 7 18981222
B complex via tobramycin tag, sample 1, H. sapiens, (Deckert et al 2006) H. sapiens 7 16809785
B complex on Zeste62, sample 1, D. melanogaster, (Herold et al 2009) D. melanogaster 6 18981222
C complex exons trimmed, H. sapiens, (Ilagan et al 2009) H. sapiens 5 19761775
Mixed spliceosome complexes on AdML, H. sapiens, (Zhou et al 2002) H. sapiens 5 12226669
Mixed spliceosome complexes on Ftz, H. sapiens, (Zhou et al 2002) H. sapiens 5 12226669
Supraspliceosome, H. sapiens, (Chen et al 2007) H. sapiens 5 17537823
Mixed complexes Weri, H. sapiens, (Sharma et al 2008) H. sapiens 3 18193060
C complex on AdML, maltose elute, H. sapiens, (Coltri et al 2011) H. sapiens 3 21526149
E-like complex (E') Weri, H. sapiens, (Sharma et al 2008) H. sapiens 2 18193060
mRNP on AdML, H. sapiens, (Merz et al 2007) H. sapiens 2 17095540
C complex on AdML, 3M urea wash, H. sapiens, (Coltri et al 2011) H. sapiens 2 21526149
H complex, H. sapiens, (Jurica et al 2002) H. sapiens 1 11991638
U2 snRNP IP'd by antibody to PRPF40A, H. sapiens, (Marakov et al 2011) H. sapiens 1 22110043
U5 35S complex, H. sapiens, (Makarov et al 2002) H. sapiens 12411573
B* complex, H. sapiens, (Makarov et al 2002) H. sapiens 12411573
tri-snRNP, H. sapiens, (Makarov et al 2002) H. sapiens 12411573
Mixed spliceosome complexes, H. sapiens, (Neubauer et al 1999) H. sapiens 9731529
Mixed spliceosome complexes, H. sapiens, (Rappsilber et al 2002) H. sapiens 12176931
U2/U5/U6 complex CDC5-tag, S. pombe, (Ohi et al 2002) S. pombe 11884590
Prp1 tap-tag pulldown, S. pombe, (Carnahan et al 2005) S. pombe 15755920
PSF-pulldown, without splicing substrate, H. sapiens, (Peng et al 2006) H. sapiens 17114945
B complex on MINX-MS2, ATPgammaS block, 40S glycerol gradient peak, H. sapiens, (Agafonov et al 2016) H. sapiens 27411562

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