Nomenclature

Gene Symbol
CG9548 (D. melanogaster)
Other Gene Symbols
BcDNA:RH02789, Dmel\CG9548
Full Name
CG9548
Other Names
—, CG9548 gene product from transcript CG9548-RA

Other Resources

Entrez: Gene Info
33909
Uniprot: Protein Info
PHF5_DROME
Organism-Specific Database
FBgn0031822
PDB: Structures
SpliProt3D: Structural Model

Gene Product Info

Molecular Weight (kD)
12.5
Domains
Motifs
Features
Complex Association
17S U2 snRNP, A complex, B complex, Bact complex, C complex, P complex
Class / Family
17S U2 snRNP
Notes

Orthologs

Name Organism
PHF5A H. sapiens
RDS3 S. cerevisiae
ini1 S. pombe
Y54F10BM.14 C. elegans
PHF5A G. gallus

View orthologs at Homologene

Identified in the following experiments:

Name Species # Of Peptides PubMed ID
Bact complex on PM5-20, H. sapiens, (Agafonov et al 2011) H. sapiens 198 21536652
B complex on MINX, H. sapiens, (Agafonov et al 2011) H. sapiens 162 21536652
A complex on MINX, H. sapiens, (Agafonov et al 2011) H. sapiens 105 21536652
17S U2 snRNP, H. sapiens, (Agafonov et al 2011) H. sapiens 76 21536652
C complex on PM5, H. sapiens, (Agafonov et al 2011) H. sapiens 50 21536652
B complex sample 2, H. sapiens, (Bessonov et al 2008) H. sapiens 22 18322460
B complex Sample#3, on MINX-MS2 "kinetically" trapped, H. sapiens, (Boesler et al 2015) H. sapiens 21 27377154
B complex on PM5, sample 2, H. sapiens, (Schmidt et al 2014) H. sapiens 20 24448447
B complex sample 1, H. sapiens, (Bessonov et al 2008) H. sapiens 19 18322460
Bact complex on PM5-20, H. sapiens, (Bessonov et al 2010) H. sapiens 18 20980672
Bact complex on PM5-10, H. sapiens, (Bessonov et al 2010) H. sapiens 17 20980672
A complex, H. sapiens, (Behzadnia et al 2007) H. sapiens 14 17332742
Bact complex, deltaPrp2 on M3Actin, Orbitrap, 0.25 pmol, S. cerevisiae, (Warkocki et al 2009) S. cerevisiae 14 19935684
B complex on PM5, sample 1, H. sapiens, (Schmidt et al 2014) H. sapiens 14 24448447
U2/U5/U6 complex Cwc2-tag, S. cerevisiae, (Ohi et al 2002) S. cerevisiae 13 11884590
B complex Sample#1, on MINX-MS2 "kinetically" trapped, H. sapiens, (Boesler et al 2015) H. sapiens 13 27377154
U2/U5/U6 complex Cwc1-tag, S. cerevisiae, (Ohi et al 2002) S. cerevisiae 12 11884590
B complex via MS2 tag, sample 2, H. sapiens, (Deckert et al 2006) H. sapiens 12 16809785
B complex via MS2 tag, sample 1, H. sapiens, (Deckert et al 2006) H. sapiens 12 16809785
Pre-B complex Sample#3, on MINX-MS2 stalled by DDX23 (hPrp28) depletion, H. sapiens, (Boesler et al 2015) H. sapiens 12 27377154
B complex Sample#2, on MINX-MS2 "kinetically" trapped, H. sapiens, (Boesler et al 2015) H. sapiens 11 27377154
Pre-B complex Sample#1, on MINX-MS2 stalled by DDX23 (hPrp28) depletion, H. sapiens, (Boesler et al 2015) H. sapiens 10 27377154
U2/U5/U6 complex CDC5-tag, S. cerevisiae, (Ohi et al 2002) S. cerevisiae 9 11884590
C complex sample 2, H. sapiens, (Bessonov et al 2008) H. sapiens 9 18322460
B complex on Ftz, sample 1, D. melanogaster, (Herold et al 2009) D. melanogaster 9 18981222
ILS, released intron complex on M3Actin7, S. cerevisiae, (Fourmann et al 2013) S. cerevisiae 9 23431055
C complex on PM5, sample 2, H. sapiens, (Schmidt et al 2014) H. sapiens 9 24448447
C complex sample 1, H. sapiens, (Bessonov et al 2008) H. sapiens 8 18322460
P complex on AdML, short 3' exon, Velos, H. sapiens, (Ilagan et al 2013) H. sapiens 8 23345524
U2/U5/U6 complex Prp19-tag, S. cerevisiae, (Ohi et al 2002) S. cerevisiae 7 11884590
C complex on MINX-GG, H. sapiens, (Bessonov et al 2010) H. sapiens 7 20980672
B complex on Ftz, sample 2, H. sapiens, (Herold et al 2009) H. sapiens 6 18981222
penta-snRNP, S. cerevisiae, (Stevens et al 2002) S. cerevisiae 6 11804584
B complex on Zeste62, sample 2, D. melanogaster, (Herold et al 2009) D. melanogaster 6 18981222
B complex via tobramycin tag, sample 1, H. sapiens, (Deckert et al 2006) H. sapiens 6 16809785
Bact complex, deltaPrp2 on M3Actin, Q-Tof, 1 pmol, S. cerevisiae, (Warkocki et al 2009) S. cerevisiae 6 19935684
35S Bact complex, deltaPrp2 (+Prp2/Spp2) on M3Actin, 500 mM KCl wash, S. cerevisiae, (Warkocki et al 2009) S. cerevisiae 6 19935684
40S B* complex, deltaPrp2 +Prp2/Spp2/ATP on M3Actin, 75 mM KCl wash, S. cerevisiae, (Warkocki et al 2009) S. cerevisiae 6 19935684
Post-catalytic complex, deltaPrp22 on M3Actin7, S. cerevisiae, (Fourmann et al 2013) S. cerevisiae 6 23431055
Pre-B complex Sample#2, on MINX-MS2 stalled by DDX23 (hPrp28) depletion, H. sapiens, (Boesler et al 2015) H. sapiens 6 27377154
C complex on PM5, H. sapiens, (Bessonov et al 2010) H. sapiens 5 20980672
E-like complex (E') HeLa, H. sapiens, (Sharma et al 2008) H. sapiens 5 18193060
B complex on Zeste62, sample 3, D. melanogaster, (Herold et al 2009) D. melanogaster 5 18981222
B complex on Zeste62, sample 1, D. melanogaster, (Herold et al 2009) D. melanogaster 5 18981222
B complex via tobramycin tag, sample 2, H. sapiens, (Deckert et al 2006) H. sapiens 5 16809785
45S Bact complex, deltaPrp2 (+Prp2/Spp2) on M3Actin, 75 mM KCl wash, S. cerevisiae, (Warkocki et al 2009) S. cerevisiae 5 19935684
C complex on AdML, 3'SS mut, Velos, H. sapiens, (Ilagan et al 2013) H. sapiens 5 23345524
Bact complex sample 2, S. cerevisiae, (Fabrizio et al 2009) S. cerevisiae 4 19941820
U2/U5/U6 complex Snt309-tag, S. cerevisiae, (Ohi et al 2002) S. cerevisiae 4 11884590
C complex on Ftz, sample 1, D. melanogaster, (Herold et al 2009) D. melanogaster 4 18981222
40S B* complex, deltaPrp2 +Prp2/Spp2/ATP on M3Actin, 75 mM KCl wash, S. cerevisiae, (Warkocki et al 2009) S. cerevisiae 4 19935684
B complex sample 1, S. cerevisiae, (Fabrizio et al 2009) S. cerevisiae 3 19941820
C complex, H. sapiens, (Ilagan et al 2009) H. sapiens 3 19761775
A-like complex (A') HeLa, H. sapiens, (Sharma et al 2008) H. sapiens 3 18193060
C complex on Ftz, sample 2, D. melanogaster, (Herold et al 2009) D. melanogaster 3 18981222
B complex on Ftz, sample 2, D. melanogaster, (Herold et al 2009) D. melanogaster 3 18981222
35S Bact complex, deltaPrp2 (+Prp2/Spp2) on M3Actin, 500 mM KCl wash, S. cerevisiae, (Warkocki et al 2009) S. cerevisiae 3 19935684
45SBact complex, deltaPrp2 (+Prp2/Spp2) on M3Actin, 75 mM KCl wash, S. cerevisiae, (Warkocki et al 2009) S. cerevisiae 3 19935684
C complex on PM5, sample 1, H. sapiens, (Schmidt et al 2014) H. sapiens 3 24448447
C complex released in 1M NaCl, H. sapiens, (Bessonov et al 2008) H. sapiens 2 18322460
delta prp2 blocked spliceosome, S. cerevisiae, (Lardelli et al 2010) S. cerevisiae 2 20089683
EDC-E complex HeLa, H. sapiens, (Sharma et al 2008) H. sapiens 2 18193060
E-like complex (E') Weri, H. sapiens, (Sharma et al 2008) H. sapiens 2 18193060
EDC-A complex Weri, H. sapiens, (Sharma et al 2008) H. sapiens 2 18193060
EDC-E complex Weri, H. sapiens, (Sharma et al 2008) H. sapiens 2 18193060
U2 snRNP IP'd by antibody to PRPF40A, H. sapiens, (Marakov et al 2011) H. sapiens 2 22110043
Released with ILS, S. cerevisiae, (Fourmann et al 2013) S. cerevisiae 2 23431055
C complex exons trimmed, H. sapiens, (Ilagan et al 2009) H. sapiens 1 19761775
C complex on ActinD31, S. cerevisiae, (Fabrizio et al 2009) S. cerevisiae 1 19941820
C complex 1M NaCl-washed core, H. sapiens, (Bessonov et al 2008) H. sapiens 1 18322460
E complex IP'd by antibody to PRPF40A, H. sapiens, (Marakov et al 2011) H. sapiens 1 22110043
C complex on AdML, maltose elute, H. sapiens, (Coltri et al 2011) H. sapiens 1 21526149
Bact complex, deltaPrp2 on M3Actin7, S. cerevisiae, (Fourmann et al 2013) S. cerevisiae 1 23431055
Prp43 dissasociated ILS 3-4 glycerol gradient fraction, S. cerevisiae, (Fourmann et al 2013) S. cerevisiae 1 23431055
Prp43 dissasociated ILS 5-6 glycerol gradient fraction, S. cerevisiae, (Fourmann et al 2013) S. cerevisiae 1 23431055
Prp43 dissasociated ILS 11-12 glycerol gradient fraction, S. cerevisiae, (Fourmann et al 2013) S. cerevisiae 1 23431055
SF3b, H. sapiens, (Will et al 2002) H. sapiens 12234937
U2 17S, H. sapiens, (Will et al 2002) H. sapiens 12234937
U11/U12 18S di-snRNP, H. sapiens, (Will et al 2004) H. sapiens 15146077
B* complex, H. sapiens, (Makarov et al 2002) H. sapiens 12411573
Mixed spliceosome complexes, H. sapiens, (Rappsilber et al 2002) H. sapiens 12176931
A complex, H. sapiens, (Hartmuth et al 2002) H. sapiens 12477934
PSF-pulldown, without splicing substrate, H. sapiens, (Peng et al 2006) H. sapiens 17114945
PSF-pulldown, with AdMl splicing subtrate, H. sapiens, (Peng et al 2006) H. sapiens 17114945
PSF-pulldown, without splicing substrate, 250 mM salt wash, H. sapiens, (Peng et al 2006) H. sapiens 17114945
PSF-pulldown, with AdMl splicing subtrate, 250 mM salt wash, H. sapiens, (Peng et al 2006) H. sapiens 17114945
28S B* complex, deltaPrp2 +Prp2/Spp2/ATP on M3Actin, 500 mM KCl wash, S. cerevisiae, (Warkocki et al 2009) S. cerevisiae 19935684
28S B* complex, deltaPrp2 +Prp2/Spp2/ATP on M3Actin, 500 mM KCl wash, S. cerevisiae, (Warkocki et al 2009) S. cerevisiae 19935684

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