Nomenclature

Gene Symbol
DHX38 (H. sapiens)
Other Gene Symbols
DDX38, KIAA0224, PRP16, PRPF16
Full Name
DEAH (Asp-Glu-Ala-His) box polypeptide 38
Other Names
PRP16, ATP-dependent RNA helicase DHX38, DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 38, DEAH box protein 38, PRP16 homolog of S.cerevisiae, pre-mRNA splicing factor ATP-dependent RNA helicase PRP16

Other Resources

Entrez: Gene Info
9785
Uniprot: Protein Info
PRP16_HUMAN
Organism-Specific Database
BioGrid: Interaction Info
115129
PDB: Structures
SpliProt3D: Structural Model
DHX38

Gene Product Info

Molecular Weight (kD)
140.5
Domains
Helicase ATP-binding, Helicase C-terminal
Motifs
DEAH box
Features
Class / Family
Second step factors
Notes

Orthologs

Name Organism
PRP16 S. cerevisiae
prp16 S. pombe
l(1)G0007 D. melanogaster
K03H1.2 C. elegans
DHX38 G. gallus

View orthologs at Homologene

Interactions
(from Hegele et al, 2012)

Interacting Partner 1 Interacting Partner 2 Interaction Type Score PubMed ID
DHX38 U2AF1 Y2H: Bait/Prey 0.85 22365833
DHX38 MFAP1 Y2H: Prey/Bait 0.5 22365833
DHX38 DHX16 Pull-down 22365833
DHX38 DHX16 Y2H: Bidirectional 1 22365833
DHX38 GPKOW Y2H: Prey/Bait 1 22365833
DHX38 GPKOW Pull-down 22365833
DHX38 RBM10 Pull-down 22365833
DHX38 RBM10 Y2H: Prey/Bait 1 22365833

view interactions at SSPPIR...

Identified in the following experiments:

Name Species # Of Peptides PubMed ID
delta prp16 blocked spliceosome, S. cerevisiae, (Lardelli et al 2010) S. cerevisiae 74 20089683
C complex on MINX-GG, H. sapiens, (Bessonov et al 2010) H. sapiens 26 20980672
C complex, H. sapiens, (Jurica et al 2002) H. sapiens 9 11991638
C complex on PM5, H. sapiens, (Bessonov et al 2010) H. sapiens 7 20980672
C complex released in 1M NaCl, H. sapiens, (Bessonov et al 2008) H. sapiens 6 18322460
C complex sample 2, H. sapiens, (Bessonov et al 2008) H. sapiens 5 18322460
Mixed spliceosome complexes on AdML, H. sapiens, (Zhou et al 2002) H. sapiens 5 12226669
C complex on PM5, sample 2, H. sapiens, (Schmidt et al 2014) H. sapiens 5 24448447
C complex, H. sapiens, (Ilagan et al 2009) H. sapiens 3 19761775
C complex exons trimmed, H. sapiens, (Ilagan et al 2009) H. sapiens 2 19761775
Mixed spliceosome complexes on Ftz, H. sapiens, (Zhou et al 2002) H. sapiens 2 12226669
C complex 1M NaCl-washed core, H. sapiens, (Bessonov et al 2008) H. sapiens 1 18322460
C complex on ActinACAC, S. cerevisiae, (Fabrizio et al 2009) S. cerevisiae 1 19941820
C complex sample 1, H. sapiens, (Bessonov et al 2008) H. sapiens 1 18322460
Bact complex on PM5-20, H. sapiens, (Bessonov et al 2010) H. sapiens 1 20980672
C complex on AdML, 3'SS mut, Velos, H. sapiens, (Ilagan et al 2013) H. sapiens 1 23345524
B complex on PM5, sample 2, H. sapiens, (Schmidt et al 2014) H. sapiens 1 24448447
C complex on PM5, sample 1, H. sapiens, (Schmidt et al 2014) H. sapiens 1 24448447
Mixed spliceosome complexes, H. sapiens, (Rappsilber et al 2002) H. sapiens 12176931

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